3D Volume and surface quantification

This plugin will compute the basic measurements about objects volume and surfaces.

The plugin will require one images as input, the will contain the objects to measure. The objects image can be a binary or labelled image, in case of a binary image, a labelling will be performed.

The values in the results table are :

• Label: the name of the image
• Value: the pixel value
• Channel: the channel number of the image
• Frame: the frame number of the image of the object in the labelled image

Then the volume of the object in pixel and calibrated unit.

• Volume(pix): the volume of the object in pixel unit (the number of voxels of the object)
• Volume(unit): the volume of the object in calibrated unit (the number of voxels of the object times the volume of one voxel)

And the surfaces computed with different algorithms.

• Surface(pix): the surface exposed in pixel unit
• Surface(unit): the surface exposed in calibrated unit
• SurfaceCorrected(pix): the corrected (smoothed) surface in pixl unit
• SurfaceNb:the number of contour voxels of the object